| 16 Apr 2016 | First Round | Ainsdale v St Helens Town | Liverpool Road, Ainsdale | Results |
| 16 Apr 2016 | First Round | Maghull v Liverpool | Old Hall Field, Maghull | Results |
| 08 May 2016 | First Round | Parkfield Liscard v Hightown St Mary's | Pemberton's Meadow, Wallasey | Results |
| 01 May 2016 | First Round | Wallasey v Formby | The Kevin McCullagh Oval, Wallasey | Results |
| 16 Apr 2016 | Second Round | Alder v Highfield | Alder Road, Liverpool | Results |
| 08 May 2016 | Second Round | Burscough v Caldy | School Lane, Burscough | Results |
| 15 May 2016 | Second Round | Fleetwood Hesketh v Leigh | Sea Cop, Southport | Results |
| 16 Apr 2016 | Second Round | Lytham v Prestatyn | Church Road, Lytham St Annes | Results |
| 15 May 2016 | Second Round | Northern v Bootle | Moor Park, Great Crosby | Results |
| 01 May 2016 | Second Round | Northop Hall v New Brighton | Smithy Lane, Northop Hall | Results |
| 08 May 2016 | Second Round | Old Xaverians v Newton-le-Willows | St Francis Xavier's College Ground, Woolton | Results |
| 01 May 2016 | Second Round | Orrell Red Triangle v Ormskirk | YMCA Ground, Billinge | Results |
| 02 May 2016 | Second Round | Rainford v Southport and Birkdale | Jubilee Recreation Ground, Rainford | Results |
| 08 May 2016 | Second Round | Rainhill v Wigan | Rainhill Recreation Ground, Rainhill | Results |
| 15 May 2016 | Second Round | Sefton Park v Spring View | Croxteth Drive, Sefton Park | Results |
| 22 May 2016 | Second Round | Skelmersdale v Colwyn Bay | Scott Rees Park, Skelmersdale | Results |
| 16 Apr 2016 | Second Round | Southport Trinity v Sutton | The Rookery, Southport | Results |
| 08 May 2016 | Second Round | Wavertree v Birkenhead Park | Sandown Lane, Wavertree | Results |
| 08 May 2016 | Second Round | Ainsdale v Maghull | Liverpool Road, Ainsdale | Results |
| 29 May 2016 | Second Round | Formby v Parkfield Liscard | Cricket Path, Formby | Results |
| 12 Jun 2016 | Third Round | Colwyn Bay v Rainford | Penrhyn Avenue, Rhos-on-Sea, Colwyn Bay | Results |
| 12 Jun 2016 | Third Round | Lytham v Ainsdale | Church Road, Lytham St Annes | Results |
| 24 Jun 2016 | Third Round | Newton-le-Willows v Rainhill | Crow Lane East, Newton-le-Willows | Results |
| 05 Jun 2016 | Third Round | Southport Trinity v Highfield | The Rookery, Southport | Results |
| 12 Jun 2016 | Third Round | Birkenhead Park v Formby | Park Drive, Birkenhead | Results |
| 12 Jun 2016 | Third Round | Bootle v Sefton Park | Wadham Road, Bootle | Results |
| 12 Jun 2016 | Third Round | Caldy v Northop Hall | Paton Field, Caldy | Results |
| 23 Jun 2016 | Third Round | Leigh v Ormskirk | Beech Walk, Leigh | Results |
| 17 Jul 2016 | Fourth Round | Highfield v Colwyn Bay | Billinge Road, Highfield | Results |
| 10 Jul 2016 | Fourth Round | Rainhill v Caldy | Rainhill Recreation Ground, Rainhill | Results |
| 02 Aug 2016 | Fourth Round | Ainsdale v Ormskirk | Liverpool Road, Ainsdale | Results |
| 10 Jul 2016 | Fourth Round | Bootle v Formby | Wadham Road, Bootle | Results |
| 21 Aug 2016 | Semi-Final | Ainsdale v Formby | Liverpool Road, Ainsdale | Results |
| 31 Jul 2016 | Semi-Final | Colwyn Bay v Rainhill | Penrhyn Avenue, Rhos-on-Sea, Colwyn Bay | Results |
| 04 Sep 2016 | Final | Formby v Colwyn Bay | Cricket Path, Formby | Results |
| 21 Jun 2016 | Third Round | Sefton Park v Bootle | Croxteth Drive, Sefton Park | Results |
| 19 Jun 2016 | Third Round | Lytham v Ainsdale | Church Road, Lytham St Annes | Results |
| 17 Jul 2016 | Fourth Round | Rainhill v Caldy | Rainhill Recreation Ground, Rainhill | Results |
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